Aerobic methane-oxidizing bacteria (methanotrophs) have the unique ability to grow on methane as their sole source of carbon and energy. They are ubiquitous in the environment and play a major role in the removal of the greenhouse gas methane from the biosphere before it is released into the atmosphere. The ability to drive oxygen-dependent methane oxidation was once assumed to be an exceptional property of a very restricted set of microbes belonging to two classes of Proteobacteria: Alphaproteobacteria and Gammaproteobacteria. While Proteobacteria still form the foundation of the methanotrophic landscape in many ecosystems, the ability to oxidize methane has also been demonstrated in the microbial phyla Verrucomicrobia and Candidatus Methylomirabilis oxyfera (phylum NC10). Over the years various methanotrophs have also been isolated, including facultative methanotrophs, extremophile species, and anaerobes, thus expanding both the taxonomic diversity and physiological range of methanotrophy. In addition, a number of cross-species interactions that enable efficient methane utilization have been identified, changing the way we view mechanisms of methane utilization. Finally, a thorough revision of core metabolic pathways has been made, and whole-genome metabolic models have been constructed, which facilitate the metabolic engineering of methanotrophic bacteria and expand the potential for their biotechnological applications.

The early history of life harbours many unresolved evolutionary questions, none more important than the genomic origin and cellular evolution of eukaryotes. An issue central to eukaryote origin concerns the position of eukaryotes in the tree of life and the relationship of the host lineage that acquired the mitochondrion some two billion years ago to lineages of modern-day archaea. Recent analyses indicate that the host lineage branches within the Archaea, prompting the search for novel archaeal lineages that can improve our understanding of the cellular evolution of eukaryotes. Here we give a brief review of the studies on Archaea, the tree of life and the cellular evolution of eukaryotes, which is followed by an overview of recent progress fueled by new genomic technologies and recent status of archaeal research in China. Future directions for the study of early evolution are considered.

Exceptional natural phenomena, such as those that occur during a total solar eclipse, provide unique opportunities to study animal behavior outside the naturally evolved context, which can be informative in more general terms. Circumstantial descriptions of abnormal animal behavior during solar eclipses abound, although scientific studies conducted during an eclipse are relatively rare due to inherent logistical difficulties. Here, honey bee foraging and homing behavior were studied during the total solar eclipse of August 21, 2017. In the first experiment, we studied foraging behavior of honey bees during the progression of the solar eclipse and found that the foraging activity drastically decreased but did not completely cease during the totality of the eclipse, in contrast to previous reports of complete cessation. The data indicate that the level of ambient light can largely overrule the internal circadian rhythm of foraging honey bees. Furthermore, colonies with a higher need for foraging decreased their foraging activity less than satiated colonies, consistent with the hypothesis that individual foraging decisions may be influenced by colony state, which affects cost-benefit analyses. In a second experiment, the temporal dynamics of homing of released workers and drones was compared in periods before, during, and after the solar eclipse. During the totality of the eclipse, very few bees arrived back at their hive, while homing before the total eclipse was accelerated, particularly in drones. The results suggest that, while the homing abilities of honey bees are not compromised until the sun is completely eclipsed, they may still interpret the diminishing light as an indicator of deteriorating flight conditions. Our unique study provides some insight into the control of honey bee foraging behavior when external cues and internal circadian rhythms are at odds, lent support to the notion that food deprivation can lead to riskier foraging, and indicated that homing in honey bees is possible even with very small amounts of sunlight.

We examine the origin of honey bee (Apis mellifera) populations in Kangaroo Island (Australia), Norfolk Island (Australia) and the Kingdom of Tonga using a highly polymorphic mitochondrial DNA region and a panel of 37 single nucleotide polymorphisms that assigns ancestry to three evolutionary lineages: Eastern Europe, Western Europe and Africa. We also examine inbreeding coefficients and genetic variation using microsatellites and mitochondrial sequencing. The honey bees of Kangaroo Island have a high proportion of Eastern European ancestry (90.2%), consistent with claims that they are of the subspecies A. m. ligustica. The honey bees of Norfolk Island also had a majority of ancestry from Eastern Europe (73.1%) with some contribution from Western Europe (21.2%). The honey bees of Tonga are mainly of Western European (70.3%) origin with some Eastern European ancestry (27.4%). Despite the suspected severe bottlenecks experienced by these island population, inbreeding coefficients were low.

This chapter focuses on how metagenomic data are applied to examine the genomic heterogeneity of natural microbial populations. It highlights the opportunities and challenges inherent to the approach and describes recently developed methods to maximally leverage the potential of these datasets while tackling some of the challenges. We describe how performing population genomic analyses using metagenomic data allows (1) resolution of ecologically and genetically cohesive populations in the environment, (2) tracking of evolutionary processes within them, and (3) application of metatranscriptomic and metaproteomic analyses to determine the in situ physiology of distinct populations. While challenges remain that are inherent to the approach, the current wave of new bioinformatic tools is starting to realize the theoretical potential of metagenomics to peer into the spatiotemporal dynamics of the genetic structure of natural populations.

Using machine data for improving the service business offers new potentials for differentiation to manufacturing firms. However, the development of industrial Smart Service concepts is a rather complex task: Different elements (e.g. technologies, digital services and personal services) have to be considered together and customer requirements for these new offers are often unknown. In this context, testing the newly developed Smart Service concepts can help manufacturing companies to avoid development failures and to ensure their value. The focus of our paper is to introduce a new approach for testing industrial Smart Service concepts on their perceived quality for potential customers. The approach includes a process model, an evaluation framework that includes criteria derived from existing approaches and specific Smart Service items.

A novel, Gram-positive, spore-forming actinomycete, designated strain 7K107^T, was isolated from a soil sample collected from the Karakum Desert, Turkmenistan. Strain 7K107^T forms extensively branched substrate mycelia and aerial mycelia which differentiate into short chains of spores. The novel strain contains meso-diaminopimelic acid as the diagnostic wall amino acid and glucose, galactose, madurose and ribose as whole cell sugars. The predominant menaquinones were identified as MK-10(H₄), MK-9(H₄), MK-10(H₆) and MK-9(H₆). The polar lipids were found to be diphosphatidylglycerol, phosphatidylethanolamine, glycolipids, phospholipids, unidentified lipids and an aminolipid. Major fatty acids were identified as C_17:0 10-methyl and C_14:0. The G + C content of the genomic DNA was determined to be 70.8%. Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain is a member of the family Streptosporangiaceae. The strain shares high 16S rRNA gene sequence similarity (96.2%) with Sphaerisporangium album YIM 48782^T followed by Sphaerisporangium corydalis NEAU-YHS15^T (96.0%) and Nonomuraea candida HMC10^T (95.9%). However, phylogenetic analyses based on 16S rRNA and gyrB genes, as well as whole genome comparison, confirmed the distinctiveness of the strain from closely related type strains of the genera Sphaerisporangium, Nonomuraea and Thermostaphylospora. On the basis of morphological, chemotaxonomic and phylogenetic as well as genomic analyses, strain 7K107^T is concluded to represent a new genus within the family Streptosporangiaceae, for which the name Desertiactinospora gelatinilytica gen. nov., sp. nov is proposed. The type strain of D. gelatinilytica is 7K107^T (= DSM 107423^T = JCM 32585^T = KCTC 49108^T).

Actinorhizal plants form a symbiotic association with the nitrogen-fixing actinobacteria Frankia. These plants have important economic and ecological benefits including land reclamation, soil stabilization, and reforestation. Recently, many non-Frankia actinobacteria have been isolated from actinorhizal root nodules suggesting that they might contribute to nodulation. Two Nocardia strains, BMG51109 and BMG111209, were isolated from Casuarina glauca nodules, and they induced root nodule-like structures in original host plant promoting seedling growth. The formed root nodule-like structures lacked a nodular root at the apex, were not capable of reducing nitrogen and had their cortical cells occupied with rod-shaped Nocardiae cells. Both Nocardia strains induced root hair deformation on the host plant. BMG111209 strain induced the expression of the ProCgNin:Gus gene, a plant gene involved in the early steps of the infection process and nodulation development. Nocardia strain BMG51109 produced three types of auxins (Indole-3-acetic acid [IAA], Indole-3-Byturic Acid [IBA] and Phenyl Acetic Acid [PAA]), while Nocardia BMG111209 only produced IAA. Analysis of the Nocardia genomes identified several important predicted biosynthetic gene clusters for plant phytohormones, secondary metabolites, and novel natural products. Co-infection studies showed that Nocardia strain BMG51109 plays a role as a “helper bacteria” promoting an earlier onset of nodulation. This study raises many questions on the ecological significance and functionality of Nocardia bacteria in actinorhizal symbioses.

Methylotrophic bacterial community is very important group of bacteria utilizing reduced carbon compounds and plays significant role in plant growth promotion (PGP), crop yield and soil fertility for sustainable agriculture. Abiotic and biotic stresses are very important factors affecting PGP in agriculture. A vast number of microbial communities play an important role in abiotic stress tolerance. The PGP methylotrophic microbes have been reported well enough to mitigate different types of biotic and abiotic stresses. The abiotic stress tolerance was well documented by several methylotrophic bacterial communities such as Hyphomicrobium, Methylarcula, Methylobacillus, Methylobacterium, Methylocapsa, Methylocella, Methyloferula, Methylohalomonas, Methylomonas, Methylophilus, Methylopila, Methylosinus, Methylotenera, Methylovirgula and Methylovorus. The abiotic stress tolerance ability of different methylotrophs and their colonization in different parts of plants under severe low temperature, high temperature, drought and salt stress conditions have been investigated in various studies. The methylotrophic communities help in proliferation of plant directly through solubilization of phosphorus, potassium and zinc, production of phytohormones viz., auxins and cytokinins; production of Fe-chelating compound, biological nitrogen fixation and ACC-deaminase activities or indirectly through productions of ammonia, siderophores and secondary metabolites. The auxin and cytokinin secreted by methylotrophs influence seed germination and plant root growth and help plants to endure water stress. On the plant surface, the abundant methylotrophs exude osmo-protectants such as sugars and alcohols which ultimately help to protect the plants from desiccation and excessive radiations. The utilisation of these potent methylotrophic strains may facilitate proper crop production, PGP by ameliorating abiotic stresses.